yubA [2019-06-25 09:29:53]

membrane protein, similar to coordinator of zonal elongation, may control [SW|cell wall synthesis ]by the [SW|penicillin-binding proteins]

locus: BSU31160

pI: 9.76

mw: 43.45 kDa

protein length: 388 aa

gene length: 1167 bp

function: may control [SW|cell wall synthesis ]by the [SW|penicillin-binding proteins]

product: similar to coordinator of zonal elongation

essential: no

synonyms

Genomic Context

categories

• [category|SW 1|Cellular processes] → [category|SW 1.1|Cell envelope and cell division] → [category|SW 1.1.2|Cell shape]
• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

Gene

Coordinates: 3,195,558 3,196,724

The protein

Protein family

• UPF0118 (perM) family (according to Swiss-Prot)

Paralogous protein(s)

• [protein|42D1A2198CB4C738F5D4C6FA95B1BA24D5620F7E|YueF], [protein|561308269D6A42506DB61EA86ECD1F96E5886920|YrrI]

[SW|Localization]

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|5B769207B05D93FEC36E97BB7074F29BB290C55A|yubA]-[gene|5A7A79A11FCBA9C90DAF526B8EAB6791D7D88E99|uppP]
  description: [pubmed|22383849]

Biological materials

Mutant

• MGNA-A223 (yubA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/223 NBRP B. subtilis, Japan]
• BKE31160 ([gene|5B769207B05D93FEC36E97BB7074F29BB290C55A|yubA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE31160 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTATCGTTCCTCCGTCAT, downstream forward: _UP4_TGATTTTCGTTTATAGTTAT
• BKK31160 ([gene|5B769207B05D93FEC36E97BB7074F29BB290C55A|yubA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK31160 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTATCGTTCCTCCGTCAT, downstream forward: _UP4_TGATTTTCGTTTATAGTTAT

References

Research papers

• 27941863